CMD - Cotton Marker Database

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Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree.

Roratto PA, Buchmann D, Santos S, Bartholomei-Santos ML. 2008. Genetics and Molecular Biology 31(1): 58-63.
PCR-mediated recombination in development of microsatellite markers: mechanism and implications.

Sharma PC, Grover A, Kahl G. 2007. Trends in Biotechnology 25(11): 490-498.
Mining microsatellites in eukaryotic genomes.

Benbouza H, Jacquemin J-M, Baudoin J-P, Mergeai G. 2006. Biotechnology, Agronomy, Society and Environment
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Optimization of a reliable, fast, cheap and sensitive silver staining method to detect SSR markers in polyacrylamide gels.

Oliveira EJ, Pádua JG, Zucchi MI, Vencovsky R, Vieira MLC. 2006. Genetics and Molecular Biology 29(2): 294-307.
Origin, evolution and genome distribution of microsatellites.

Karaca M, Bilgen M, Onus AN, Ince AG, Elmasulu SY. 2005. Journal of Genetics 84(1): 49-54.
Exact tandem repeats analyzer (E-TRA): a new program for DNA sequence mining.

Kumpatla SP. 2005. In: Recent research developments in plant molecular biology Vol. 2. Trivandrum, India:
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Simple sequence repeats: Abundance, marker development and applications in plant genetics.

Hancock J. M., Simon M. 2005. Gene 345: 113-118.
Simple sequence repeats in proteins and their significance for network evolution.

Michele Morgante, Michael Hanafey & Wayne Powell. 2002. Nature Genetics 30: 194-200.
Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes.

Volfovsky N., Haas B. J., Salzberg S. L. 2001. Genome Biology 2(8): research0027.1-research0027.11.
A clustering method for repeat analysis in DNA sequences.

Edited by R J Henry, Centre for Plant Conservation Genetics, Australia. 2001
Plant Genotyping: The DNA Fingerprinting of Plants

Cardle L., Ramsay L., Milbourne D., Macaulay M., Marshall D., Waugh R. 2000. Genetics 156: 847-854.
Computational and experimental characterization of physically clustered simple sequence repeats in plants.

Yong Zhu, Joan E. Strassmann and David C. Queller. 2000. Genetics Research 76: 227-236.
Insertions, substitutions, and the origin of microsatellites.

Geoffrey K. Chambers and Elizabeth S. MacAvoy. 2000. CBP Part B 126: 455-476.
Microsatellites : consensus and controversy.

Edited by David B. Goldstein and Christian Schlotterer, 1999
Microsatellites: Evolution and Applications

Kubis S., Schmidt T., Heslop-Harrison J. S. 1998. Annals of Botany 82 (Supplement A): 45-55.
Repetitive DNA elements as a major component of plant genomes.

Idury R. M., Cardon L. R. 1997. Genome Research 7: 1104-1109.
A simple method for automated allele binning in microsatellite markers.

Mansfield E. S., Vainer M., Enad S., Barker D. L., Harris D., Rappaport E., Fortina P. 1996.
Genome Research 6:893-903.
Sensitivity, reproducibility, and accuracy in short tandem repeat genotyping using capillary array electrophoresis.

Brahmachari S. K., Meera G., Sarkar P. S., Balagurumoorthy P., Tripathi J., Raghavan S., Shaligram U.,
Pataskar S. 1995. Electrophoresis 16: 1705-1714.
Simple repetitive sequences in the genome : Structure and functional significance.

Perlin M. W., Lancia G., Ng S-K. 1995. Am. J. Hum. Genet. 57: 1199-1210.
Toward fully automated genotyping: genotyping microsatellite markers by deconvolution.

Brown J., Hardwick L. J., Wright A. F. 1995. Molecular and Cellular Probes 9: 53-58.
A simple method for rapid isolation of microsatellites from yeast artificial chromosomes.

Wang Z., Weber J. L., Zhong G., Tanksley S.D. 1994. Theor. Appl. Genet 88: 1-6.
Survey of plant short tandem DNA repeats.

Harding R. M., Boyce A. J., Clegg J. B. 1992. Genetics 132: 847-859.
The evolution of tandemly repetitive DNA: recombination rules.