PBC Bioinformatics

RESULTS SUMMARY
View contig list
Back to eSNPs Projects

Total sequences analysed = 290889

Sequences sorted into 27463 contigs and 0 singletons

Total SNPs detected = 71017

Total consensus size = 32130436 bp

SNP frequency = 0.22/100 bp

Smallest contig = 2 sequences

  Total transitions = 38657

  Total transversions = 20495

  Total indels = 11865

6296 contigs containing 2 sequences

(0.00)% of these contigs contain snps

3700 contigs containing 3 sequences

(0.00)% of these contigs contain snps

2787 contigs containing 4 sequences

1226(43.99)% of these contigs contain snps

with a total of 6816 snps

2164 contigs containing 5 sequences

(0.00)% of these contigs contain snps

1595 contigs containing 6 sequences

273(17.12)% of these contigs contain snps

with a total of 1125 snps

1336 contigs containing 7 sequences

543(40.64)% of these contigs contain snps

with a total of 2681 snps

1085 contigs containing 8 sequences

568(52.35)% of these contigs contain snps

with a total of 3789 snps

939 contigs containing 9 sequences

268(28.54)% of these contigs contain snps

with a total of 1160 snps

795 contigs containing 10 sequences

286(35.97)% of these contigs contain snps

with a total of 1457 snps

619 contigs containing 11 sequences

314(50.73)% of these contigs contain snps

with a total of 1688 snps

564 contigs containing 12 sequences

334(59.22)% of these contigs contain snps

with a total of 2139 snps

532 contigs containing 13 sequences

182(34.21)% of these contigs contain snps

with a total of 746 snps

373 contigs containing 14 sequences

171(45.84)% of these contigs contain snps

with a total of 830 snps

367 contigs containing 15 sequences

185(50.41)% of these contigs contain snps

with a total of 1005 snps

327 contigs containing 16 sequences

180(55.05)% of these contigs contain snps

with a total of 1204 snps

288 contigs containing 17 sequences

195(67.71)% of these contigs contain snps

with a total of 1385 snps

257 contigs containing 18 sequences

171(66.54)% of these contigs contain snps

with a total of 1194 snps

231 contigs containing 19 sequences

162(70.13)% of these contigs contain snps

with a total of 1115 snps

209 contigs containing 20 sequences

161(77.03)% of these contigs contain snps

with a total of 1333 snps

219 contigs containing 21 sequences

124(56.62)% of these contigs contain snps

with a total of 900 snps

184 contigs containing 22 sequences

129(70.11)% of these contigs contain snps

with a total of 818 snps

151 contigs containing 23 sequences

118(78.15)% of these contigs contain snps

with a total of 952 snps

126 contigs containing 24 sequences

101(80.16)% of these contigs contain snps

with a total of 833 snps

131 contigs containing 25 sequences

100(76.34)% of these contigs contain snps

with a total of 787 snps

149 contigs containing 26 sequences

124(83.22)% of these contigs contain snps

with a total of 979 snps

113 contigs containing 27 sequences

95(84.07)% of these contigs contain snps

with a total of 683 snps

104 contigs containing 28 sequences

90(86.54)% of these contigs contain snps

with a total of 744 snps

91 contigs containing 29 sequences

80(87.91)% of these contigs contain snps

with a total of 809 snps

76 contigs containing 30 sequences

62(81.58)% of these contigs contain snps

with a total of 641 snps

87 contigs containing 31 sequences

77(88.51)% of these contigs contain snps

with a total of 848 snps

75 contigs containing 32 sequences

66(88.00)% of these contigs contain snps

with a total of 714 snps

59 contigs containing 33 sequences

54(91.53)% of these contigs contain snps

with a total of 588 snps

72 contigs containing 34 sequences

66(91.67)% of these contigs contain snps

with a total of 796 snps

66 contigs containing 35 sequences

61(92.42)% of these contigs contain snps

with a total of 860 snps

68 contigs containing 36 sequences

68(100.00)% of these contigs contain snps

with a total of 945 snps

48 contigs containing 37 sequences

47(97.92)% of these contigs contain snps

with a total of 636 snps

53 contigs containing 38 sequences

51(96.23)% of these contigs contain snps

with a total of 615 snps

51 contigs containing 39 sequences

51(100.00)% of these contigs contain snps

with a total of 679 snps

33 contigs containing 40 sequences

30(90.91)% of these contigs contain snps

with a total of 448 snps

44 contigs containing 41 sequences

43(97.73)% of these contigs contain snps

with a total of 632 snps

39 contigs containing 42 sequences

36(92.31)% of these contigs contain snps

with a total of 492 snps

32 contigs containing 43 sequences

32(100.00)% of these contigs contain snps

with a total of 536 snps

37 contigs containing 44 sequences

36(97.30)% of these contigs contain snps

with a total of 593 snps

34 contigs containing 45 sequences

34(100.00)% of these contigs contain snps

with a total of 507 snps

28 contigs containing 46 sequences

26(92.86)% of these contigs contain snps

with a total of 441 snps

29 contigs containing 47 sequences

29(100.00)% of these contigs contain snps

with a total of 511 snps

35 contigs containing 48 sequences

34(97.14)% of these contigs contain snps

with a total of 578 snps

29 contigs containing 49 sequences

27(93.10)% of these contigs contain snps

with a total of 431 snps

22 contigs containing 50 sequences

22(100.00)% of these contigs contain snps

with a total of 434 snps

16 contigs containing 51 sequences

16(100.00)% of these contigs contain snps

with a total of 323 snps

25 contigs containing 52 sequences

22(88.00)% of these contigs contain snps

with a total of 371 snps

15 contigs containing 53 sequences

15(100.00)% of these contigs contain snps

with a total of 325 snps

22 contigs containing 54 sequences

21(95.45)% of these contigs contain snps

with a total of 392 snps

18 contigs containing 55 sequences

18(100.00)% of these contigs contain snps

with a total of 360 snps

21 contigs containing 56 sequences

20(95.24)% of these contigs contain snps

with a total of 374 snps

20 contigs containing 57 sequences

19(95.00)% of these contigs contain snps

with a total of 468 snps

16 contigs containing 58 sequences

16(100.00)% of these contigs contain snps

with a total of 449 snps

12 contigs containing 59 sequences

12(100.00)% of these contigs contain snps

with a total of 225 snps

14 contigs containing 60 sequences

14(100.00)% of these contigs contain snps

with a total of 233 snps

9 contigs containing 61 sequences

9(100.00)% of these contigs contain snps

with a total of 134 snps

13 contigs containing 62 sequences

13(100.00)% of these contigs contain snps

with a total of 251 snps

6 contigs containing 63 sequences

6(100.00)% of these contigs contain snps

with a total of 125 snps

8 contigs containing 64 sequences

8(100.00)% of these contigs contain snps

with a total of 100 snps

14 contigs containing 65 sequences

14(100.00)% of these contigs contain snps

with a total of 280 snps

9 contigs containing 66 sequences

9(100.00)% of these contigs contain snps

with a total of 204 snps

13 contigs containing 67 sequences

13(100.00)% of these contigs contain snps

with a total of 230 snps

15 contigs containing 68 sequences

15(100.00)% of these contigs contain snps

with a total of 356 snps

10 contigs containing 69 sequences

10(100.00)% of these contigs contain snps

with a total of 193 snps

7 contigs containing 70 sequences

7(100.00)% of these contigs contain snps

with a total of 161 snps

19 contigs containing 71 sequences

19(100.00)% of these contigs contain snps

with a total of 409 snps

9 contigs containing 72 sequences

9(100.00)% of these contigs contain snps

with a total of 190 snps

18 contigs containing 73 sequences

18(100.00)% of these contigs contain snps

with a total of 466 snps

9 contigs containing 74 sequences

9(100.00)% of these contigs contain snps

with a total of 147 snps

5 contigs containing 75 sequences

5(100.00)% of these contigs contain snps

with a total of 99 snps

9 contigs containing 76 sequences

9(100.00)% of these contigs contain snps

with a total of 154 snps

10 contigs containing 77 sequences

10(100.00)% of these contigs contain snps

with a total of 267 snps

4 contigs containing 78 sequences

4(100.00)% of these contigs contain snps

with a total of 115 snps

13 contigs containing 79 sequences

13(100.00)% of these contigs contain snps

with a total of 310 snps

10 contigs containing 80 sequences

10(100.00)% of these contigs contain snps

with a total of 252 snps

10 contigs containing 81 sequences

9(90.00)% of these contigs contain snps

with a total of 210 snps

4 contigs containing 82 sequences

4(100.00)% of these contigs contain snps

with a total of 190 snps

7 contigs containing 83 sequences

6(85.71)% of these contigs contain snps

with a total of 171 snps

7 contigs containing 84 sequences

7(100.00)% of these contigs contain snps

with a total of 182 snps

2 contigs containing 85 sequences

2(100.00)% of these contigs contain snps

with a total of 56 snps

3 contigs containing 86 sequences

3(100.00)% of these contigs contain snps

with a total of 66 snps

5 contigs containing 87 sequences

5(100.00)% of these contigs contain snps

with a total of 139 snps

4 contigs containing 88 sequences

4(100.00)% of these contigs contain snps

with a total of 127 snps

6 contigs containing 89 sequences

6(100.00)% of these contigs contain snps

with a total of 149 snps

5 contigs containing 90 sequences

5(100.00)% of these contigs contain snps

with a total of 244 snps

5 contigs containing 91 sequences

5(100.00)% of these contigs contain snps

with a total of 84 snps

5 contigs containing 92 sequences

5(100.00)% of these contigs contain snps

with a total of 146 snps

6 contigs containing 93 sequences

6(100.00)% of these contigs contain snps

with a total of 211 snps

12 contigs containing 94 sequences

12(100.00)% of these contigs contain snps

with a total of 346 snps

1 contigs containing 95 sequences

1(100.00)% of these contigs contain snps

with a total of 15 snps

6 contigs containing 96 sequences

6(100.00)% of these contigs contain snps

with a total of 140 snps

3 contigs containing 97 sequences

3(100.00)% of these contigs contain snps

with a total of 82 snps

1 contigs containing 98 sequences

1(100.00)% of these contigs contain snps

with a total of 7 snps

3 contigs containing 99 sequences

3(100.00)% of these contigs contain snps

with a total of 119 snps

3 contigs containing 100 sequences

3(100.00)% of these contigs contain snps

with a total of 49 snps

5 contigs containing 101 sequences

5(100.00)% of these contigs contain snps

with a total of 162 snps

1 contigs containing 102 sequences

1(100.00)% of these contigs contain snps

with a total of 35 snps

5 contigs containing 103 sequences

5(100.00)% of these contigs contain snps

with a total of 255 snps

2 contigs containing 104 sequences

2(100.00)% of these contigs contain snps

with a total of 50 snps

3 contigs containing 105 sequences

2(66.67)% of these contigs contain snps

with a total of 78 snps

3 contigs containing 106 sequences

2(66.67)% of these contigs contain snps

with a total of 66 snps

3 contigs containing 107 sequences

3(100.00)% of these contigs contain snps

with a total of 97 snps

7 contigs containing 108 sequences

7(100.00)% of these contigs contain snps

with a total of 266 snps

2 contigs containing 109 sequences

2(100.00)% of these contigs contain snps

with a total of 12 snps

3 contigs containing 110 sequences

3(100.00)% of these contigs contain snps

with a total of 66 snps

1 contigs containing 111 sequences

1(100.00)% of these contigs contain snps

with a total of 13 snps

2 contigs containing 112 sequences

2(100.00)% of these contigs contain snps

with a total of 108 snps

3 contigs containing 113 sequences

3(100.00)% of these contigs contain snps

with a total of 39 snps

1 contigs containing 114 sequences

1(100.00)% of these contigs contain snps

with a total of 29 snps

6 contigs containing 115 sequences

6(100.00)% of these contigs contain snps

with a total of 194 snps

4 contigs containing 116 sequences

4(100.00)% of these contigs contain snps

with a total of 181 snps

5 contigs containing 117 sequences

5(100.00)% of these contigs contain snps

with a total of 167 snps

4 contigs containing 118 sequences

4(100.00)% of these contigs contain snps

with a total of 177 snps

2 contigs containing 119 sequences

2(100.00)% of these contigs contain snps

with a total of 39 snps

2 contigs containing 120 sequences

2(100.00)% of these contigs contain snps

with a total of 74 snps

3 contigs containing 121 sequences

3(100.00)% of these contigs contain snps

with a total of 107 snps

2 contigs containing 122 sequences

2(100.00)% of these contigs contain snps

with a total of 54 snps

4 contigs containing 123 sequences

4(100.00)% of these contigs contain snps

with a total of 141 snps

3 contigs containing 124 sequences

3(100.00)% of these contigs contain snps

with a total of 162 snps

3 contigs containing 125 sequences

3(100.00)% of these contigs contain snps

with a total of 51 snps

1 contigs containing 127 sequences

1(100.00)% of these contigs contain snps

with a total of 37 snps

1 contigs containing 128 sequences

1(100.00)% of these contigs contain snps

with a total of 26 snps

1 contigs containing 130 sequences

1(100.00)% of these contigs contain snps

with a total of 34 snps

1 contigs containing 133 sequences

1(100.00)% of these contigs contain snps

with a total of 15 snps

3 contigs containing 134 sequences

3(100.00)% of these contigs contain snps

with a total of 85 snps

2 contigs containing 135 sequences

2(100.00)% of these contigs contain snps

with a total of 89 snps

1 contigs containing 136 sequences

1(100.00)% of these contigs contain snps

with a total of 22 snps

1 contigs containing 137 sequences

1(100.00)% of these contigs contain snps

with a total of 65 snps

1 contigs containing 138 sequences

1(100.00)% of these contigs contain snps

with a total of 29 snps

1 contigs containing 139 sequences

1(100.00)% of these contigs contain snps

with a total of 50 snps

2 contigs containing 140 sequences

2(100.00)% of these contigs contain snps

with a total of 114 snps

4 contigs containing 141 sequences

4(100.00)% of these contigs contain snps

with a total of 133 snps

4 contigs containing 142 sequences

4(100.00)% of these contigs contain snps

with a total of 148 snps

1 contigs containing 143 sequences

1(100.00)% of these contigs contain snps

with a total of 29 snps

1 contigs containing 144 sequences

1(100.00)% of these contigs contain snps

with a total of 11 snps

1 contigs containing 145 sequences

1(100.00)% of these contigs contain snps

with a total of 33 snps

2 contigs containing 146 sequences

2(100.00)% of these contigs contain snps

with a total of 71 snps

2 contigs containing 147 sequences

2(100.00)% of these contigs contain snps

with a total of 50 snps

1 contigs containing 148 sequences

1(100.00)% of these contigs contain snps

with a total of 55 snps

1 contigs containing 149 sequences

1(100.00)% of these contigs contain snps

with a total of 36 snps

2 contigs containing 150 sequences

2(100.00)% of these contigs contain snps

with a total of 69 snps

5 contigs containing 151 sequences

5(100.00)% of these contigs contain snps

with a total of 170 snps

3 contigs containing 152 sequences

3(100.00)% of these contigs contain snps

with a total of 105 snps

2 contigs containing 153 sequences

2(100.00)% of these contigs contain snps

with a total of 36 snps

3 contigs containing 154 sequences

3(100.00)% of these contigs contain snps

with a total of 112 snps

2 contigs containing 155 sequences

2(100.00)% of these contigs contain snps

with a total of 24 snps

1 contigs containing 156 sequences

1(100.00)% of these contigs contain snps

with a total of 78 snps

1 contigs containing 157 sequences

1(100.00)% of these contigs contain snps

with a total of 76 snps

2 contigs containing 158 sequences

2(100.00)% of these contigs contain snps

with a total of 74 snps

1 contigs containing 159 sequences

1(100.00)% of these contigs contain snps

with a total of 49 snps

1 contigs containing 160 sequences

1(100.00)% of these contigs contain snps

with a total of 69 snps

1 contigs containing 162 sequences

1(100.00)% of these contigs contain snps

with a total of 9 snps

3 contigs containing 163 sequences

3(100.00)% of these contigs contain snps

with a total of 149 snps

1 contigs containing 164 sequences

1(100.00)% of these contigs contain snps

with a total of 47 snps

1 contigs containing 165 sequences

1(100.00)% of these contigs contain snps

with a total of 43 snps

2 contigs containing 166 sequences

2(100.00)% of these contigs contain snps

with a total of 35 snps

1 contigs containing 168 sequences

1(100.00)% of these contigs contain snps

with a total of 31 snps

1 contigs containing 170 sequences

1(100.00)% of these contigs contain snps

with a total of 16 snps

2 contigs containing 172 sequences

2(100.00)% of these contigs contain snps

with a total of 83 snps

2 contigs containing 173 sequences

2(100.00)% of these contigs contain snps

with a total of 107 snps

1 contigs containing 174 sequences

1(100.00)% of these contigs contain snps

with a total of 40 snps

1 contigs containing 177 sequences

1(100.00)% of these contigs contain snps

with a total of 53 snps

1 contigs containing 180 sequences

1(100.00)% of these contigs contain snps

with a total of 32 snps

1 contigs containing 181 sequences

1(100.00)% of these contigs contain snps

with a total of 68 snps

1 contigs containing 184 sequences

1(100.00)% of these contigs contain snps

with a total of 43 snps

3 contigs containing 185 sequences

3(100.00)% of these contigs contain snps

with a total of 136 snps

1 contigs containing 186 sequences

1(100.00)% of these contigs contain snps

with a total of 47 snps

1 contigs containing 187 sequences

1(100.00)% of these contigs contain snps

with a total of 32 snps

1 contigs containing 188 sequences

1(100.00)% of these contigs contain snps

with a total of 15 snps

1 contigs containing 190 sequences

1(100.00)% of these contigs contain snps

with a total of 41 snps

1 contigs containing 193 sequences

1(100.00)% of these contigs contain snps

with a total of 21 snps

2 contigs containing 196 sequences

2(100.00)% of these contigs contain snps

with a total of 52 snps

1 contigs containing 198 sequences

1(100.00)% of these contigs contain snps

with a total of 50 snps

2 contigs containing 202 sequences

2(100.00)% of these contigs contain snps

with a total of 128 snps

2 contigs containing 203 sequences

2(100.00)% of these contigs contain snps

with a total of 126 snps

1 contigs containing 204 sequences

1(100.00)% of these contigs contain snps

with a total of 55 snps

1 contigs containing 205 sequences

1(100.00)% of these contigs contain snps

with a total of 84 snps

1 contigs containing 209 sequences

1(100.00)% of these contigs contain snps

with a total of 87 snps

2 contigs containing 210 sequences

2(100.00)% of these contigs contain snps

with a total of 96 snps

1 contigs containing 214 sequences

1(100.00)% of these contigs contain snps

with a total of 23 snps

2 contigs containing 218 sequences

2(100.00)% of these contigs contain snps

with a total of 57 snps

1 contigs containing 220 sequences

1(100.00)% of these contigs contain snps

with a total of 49 snps

2 contigs containing 234 sequences

2(100.00)% of these contigs contain snps

with a total of 87 snps

2 contigs containing 235 sequences

2(100.00)% of these contigs contain snps

with a total of 89 snps

1 contigs containing 239 sequences

1(100.00)% of these contigs contain snps

with a total of 36 snps

1 contigs containing 241 sequences

1(100.00)% of these contigs contain snps

with a total of 55 snps

1 contigs containing 243 sequences

1(100.00)% of these contigs contain snps

with a total of 37 snps

1 contigs containing 244 sequences

1(100.00)% of these contigs contain snps

with a total of 46 snps

3 contigs containing 245 sequences

3(100.00)% of these contigs contain snps

with a total of 121 snps

1 contigs containing 247 sequences

1(100.00)% of these contigs contain snps

with a total of 31 snps

1 contigs containing 251 sequences

1(100.00)% of these contigs contain snps

with a total of 45 snps

1 contigs containing 260 sequences

1(100.00)% of these contigs contain snps

with a total of 37 snps

2 contigs containing 262 sequences

2(100.00)% of these contigs contain snps

with a total of 115 snps

1 contigs containing 266 sequences

1(100.00)% of these contigs contain snps

with a total of 63 snps

1 contigs containing 269 sequences

1(100.00)% of these contigs contain snps

with a total of 41 snps

1 contigs containing 276 sequences