PBC Bioinformatics
               
               
               

RESULTS SUMMARY
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  Total sequences analysed = 27947

  Sequences sorted into 5757 contigs and 0 singletons

  Total SNPs detected = 1888

  Total consensus size = 5194267 bp

  SNP frequency = 0.04/100 bp

  Smallest contig = 2 sequences

  Total transitions = 874

  Total transversions = 750

  Total indels = 264

  2512 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  1044 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  606 contigs containing 4 sequences

    159(26.24)% of these contigs contain snps

    with a total of 755 snps

  391 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  234 contigs containing 6 sequences

    14(5.98)% of these contigs contain snps

    with a total of 49 snps

  162 contigs containing 7 sequences

    20(12.35)% of these contigs contain snps

    with a total of 62 snps

  137 contigs containing 8 sequences

    31(22.63)% of these contigs contain snps

    with a total of 246 snps

  96 contigs containing 9 sequences

    4(4.17)% of these contigs contain snps

    with a total of 26 snps

  97 contigs containing 10 sequences

    5(5.15)% of these contigs contain snps

    with a total of 9 snps

  87 contigs containing 11 sequences

    9(10.34)% of these contigs contain snps

    with a total of 43 snps

  47 contigs containing 12 sequences

    7(14.89)% of these contigs contain snps

    with a total of 55 snps

  43 contigs containing 13 sequences

    1(2.33)% of these contigs contain snps

    with a total of 5 snps

  36 contigs containing 14 sequences

    2(5.56)% of these contigs contain snps

    with a total of 15 snps

  26 contigs containing 15 sequences

    3(11.54)% of these contigs contain snps

    with a total of 21 snps

  24 contigs containing 16 sequences

    1(4.17)% of these contigs contain snps

    with a total of 1 snps

  21 contigs containing 17 sequences

    4(19.05)% of these contigs contain snps

    with a total of 30 snps

  19 contigs containing 18 sequences

    3(15.79)% of these contigs contain snps

    with a total of 21 snps

  18 contigs containing 19 sequences

    5(27.78)% of these contigs contain snps

    with a total of 41 snps

  16 contigs containing 20 sequences

    4(25.00)% of these contigs contain snps

    with a total of 17 snps

  15 contigs containing 21 sequences

    3(20.00)% of these contigs contain snps

    with a total of 8 snps

  11 contigs containing 22 sequences

    2(18.18)% of these contigs contain snps

    with a total of 20 snps

  6 contigs containing 23 sequences

    1(16.67)% of these contigs contain snps

    with a total of 1 snps

  11 contigs containing 24 sequences

    3(27.27)% of these contigs contain snps

    with a total of 15 snps

  8 contigs containing 25 sequences

    4(50.00)% of these contigs contain snps

    with a total of 31 snps

  7 contigs containing 26 sequences

    2(28.57)% of these contigs contain snps

    with a total of 10 snps

  5 contigs containing 27 sequences

    2(40.00)% of these contigs contain snps

    with a total of 12 snps

  4 contigs containing 28 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 29 sequences

    2(50.00)% of these contigs contain snps

    with a total of 2 snps

  6 contigs containing 30 sequences

    2(33.33)% of these contigs contain snps

    with a total of 3 snps

  8 contigs containing 31 sequences

    2(25.00)% of these contigs contain snps

    with a total of 4 snps

  2 contigs containing 32 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  3 contigs containing 33 sequences

    2(66.67)% of these contigs contain snps

    with a total of 5 snps

  2 contigs containing 34 sequences

    1(50.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 35 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 36 sequences

    (0.00)% of these contigs contain snps

  2 contigs containing 37 sequences

    2(100.00)% of these contigs contain snps

    with a total of 2 snps

  3 contigs containing 38 sequences

    (0.00)% of these contigs contain snps

  4 contigs containing 39 sequences

    2(50.00)% of these contigs contain snps

    with a total of 16 snps

  4 contigs containing 40 sequences

    2(50.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 41 sequences

    1(100.00)% of these contigs contain snps

    with a total of 3 snps

  3 contigs containing 42 sequences

    2(66.67)% of these contigs contain snps

    with a total of 32 snps

  3 contigs containing 43 sequences

    2(66.67)% of these contigs contain snps

    with a total of 6 snps

  2 contigs containing 44 sequences

    2(100.00)% of these contigs contain snps

    with a total of 16 snps

  1 contigs containing 46 sequences

    1(100.00)% of these contigs contain snps

    with a total of 11 snps

  1 contigs containing 47 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 49 sequences

    (0.00)% of these contigs contain snps

  1 contigs containing 50 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 51 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  3 contigs containing 52 sequences

    3(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 53 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 57 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 60 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 62 sequences

    1(100.00)% of these contigs contain snps

    with a total of 2 snps

  1 contigs containing 64 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  2 contigs containing 66 sequences

    2(100.00)% of these contigs contain snps

    with a total of 21 snps

  1 contigs containing 67 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 70 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  2 contigs containing 78 sequences

    2(100.00)% of these contigs contain snps

    with a total of 34 snps

  1 contigs containing 92 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 107 sequences

    1(100.00)% of these contigs contain snps

    with a total of 1 snps

  1 contigs containing 113 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 125 sequences

    1(100.00)% of these contigs contain snps

    with a total of 71 snps

  1 contigs containing 165 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 181 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps


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(C) Plant Biotechnology Centre Australia, DPI
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Dave.Edwards.vic.gov.au
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