G.hirsutum CAP3 and SNP Summary
The type and frequency of single nucleotide polymorphisms in the G.hirsutum unigene v.1 (May 27, 2008) assembly
were determined using the AutoSNP software package. CMD display includes only contigs containing SNPs.
View autoSNP output:
Summary
List of Contigs with SNPs
|
Processing Summary
|
|
Number of ESTs available
|
265,834
|
|
Number of ESTs in Contigs
|
218,666
|
|
Total Consensus Size for Contigs
|
28,557,654 bp
|
|
Average EST Length
|
684 bp
|
|
Number of Contigs (CAP3 Assembly, -p 75)
|
25,301
|
|
Average Length of Contigs
|
1129 bp
|
|
Number of Singlets
|
47,168
|
|
Number of Putative Unigenes
|
72,469
|
|
Number of SNPs in Contigs
|
45,964
|
|
SNP Frequency
|
0.16/100 bp
|
|
Total Transitions
|
24,639
|
|
Total Transversions
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13,764
|
|
Total Indels
|
7,561
|
|
