PBC Bioinformatics
               
               
               

RESULTS SUMMARY
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  Total sequences analysed = 218666

  Sequences sorted into 25301 contigs and 0 singletons

  Total SNPs detected = 45964

  Total consensus size = 28557654 bp

  SNP frequency = 0.16/100 bp

  Smallest contig = 2 sequences

  Total transitions = 24639

  Total transversions = 13764

  Total indels = 7561

  6696 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  3780 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  2843 contigs containing 4 sequences

    1123(39.50)% of these contigs contain snps

    with a total of 6690 snps

  2016 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  1514 contigs containing 6 sequences

    199(13.14)% of these contigs contain snps

    with a total of 927 snps

  1185 contigs containing 7 sequences

    337(28.44)% of these contigs contain snps

    with a total of 2089 snps

  972 contigs containing 8 sequences

    434(44.65)% of these contigs contain snps

    with a total of 2850 snps

  814 contigs containing 9 sequences

    142(17.44)% of these contigs contain snps

    with a total of 738 snps

  654 contigs containing 10 sequences

    208(31.80)% of these contigs contain snps

    with a total of 1070 snps

  535 contigs containing 11 sequences

    218(40.75)% of these contigs contain snps

    with a total of 1328 snps

  450 contigs containing 12 sequences

    207(46.00)% of these contigs contain snps

    with a total of 1475 snps

  378 contigs containing 13 sequences

    85(22.49)% of these contigs contain snps

    with a total of 506 snps

  296 contigs containing 14 sequences

    105(35.47)% of these contigs contain snps

    with a total of 581 snps

  275 contigs containing 15 sequences

    118(42.91)% of these contigs contain snps

    with a total of 788 snps

  248 contigs containing 16 sequences

    116(46.77)% of these contigs contain snps

    with a total of 688 snps

  239 contigs containing 17 sequences

    114(47.70)% of these contigs contain snps

    with a total of 889 snps

  202 contigs containing 18 sequences

    121(59.90)% of these contigs contain snps

    with a total of 1011 snps

  162 contigs containing 19 sequences

    104(64.20)% of these contigs contain snps

    with a total of 773 snps

  159 contigs containing 20 sequences

    110(69.18)% of these contigs contain snps

    with a total of 1003 snps

  148 contigs containing 21 sequences

    78(52.70)% of these contigs contain snps

    with a total of 653 snps

  140 contigs containing 22 sequences

    81(57.86)% of these contigs contain snps

    with a total of 569 snps

  107 contigs containing 23 sequences

    63(58.88)% of these contigs contain snps

    with a total of 527 snps

  87 contigs containing 24 sequences

    62(71.26)% of these contigs contain snps

    with a total of 483 snps

  76 contigs containing 25 sequences

    49(64.47)% of these contigs contain snps

    with a total of 476 snps

  83 contigs containing 26 sequences

    63(75.90)% of these contigs contain snps

    with a total of 589 snps

  79 contigs containing 27 sequences

    56(70.89)% of these contigs contain snps

    with a total of 553 snps

  68 contigs containing 28 sequences

    58(85.29)% of these contigs contain snps

    with a total of 648 snps

  55 contigs containing 29 sequences

    43(78.18)% of these contigs contain snps

    with a total of 429 snps

  61 contigs containing 30 sequences

    48(78.69)% of these contigs contain snps

    with a total of 597 snps

  44 contigs containing 31 sequences

    36(81.82)% of these contigs contain snps

    with a total of 413 snps

  39 contigs containing 32 sequences

    34(87.18)% of these contigs contain snps

    with a total of 394 snps

  46 contigs containing 33 sequences

    38(82.61)% of these contigs contain snps

    with a total of 463 snps

  37 contigs containing 34 sequences

    29(78.38)% of these contigs contain snps

    with a total of 347 snps

  36 contigs containing 35 sequences

    33(91.67)% of these contigs contain snps

    with a total of 460 snps

  27 contigs containing 36 sequences

    25(92.59)% of these contigs contain snps

    with a total of 329 snps

  34 contigs containing 37 sequences

    31(91.18)% of these contigs contain snps

    with a total of 437 snps

  29 contigs containing 38 sequences

    29(100.00)% of these contigs contain snps

    with a total of 395 snps

  24 contigs containing 39 sequences

    22(91.67)% of these contigs contain snps

    with a total of 232 snps

  32 contigs containing 40 sequences

    28(87.50)% of these contigs contain snps

    with a total of 480 snps

  21 contigs containing 41 sequences

    19(90.48)% of these contigs contain snps

    with a total of 264 snps

  23 contigs containing 42 sequences

    22(95.65)% of these contigs contain snps

    with a total of 282 snps

  29 contigs containing 43 sequences

    25(86.21)% of these contigs contain snps

    with a total of 313 snps

  20 contigs containing 44 sequences

    19(95.00)% of these contigs contain snps

    with a total of 217 snps

  17 contigs containing 45 sequences

    15(88.24)% of these contigs contain snps

    with a total of 262 snps

  18 contigs containing 46 sequences

    17(94.44)% of these contigs contain snps

    with a total of 266 snps

  19 contigs containing 47 sequences

    17(89.47)% of these contigs contain snps

    with a total of 248 snps

  15 contigs containing 48 sequences

    15(100.00)% of these contigs contain snps

    with a total of 176 snps

  17 contigs containing 49 sequences

    15(88.24)% of these contigs contain snps

    with a total of 239 snps

  13 contigs containing 50 sequences

    11(84.62)% of these contigs contain snps

    with a total of 147 snps

  14 contigs containing 51 sequences

    13(92.86)% of these contigs contain snps

    with a total of 173 snps

  9 contigs containing 52 sequences

    7(77.78)% of these contigs contain snps

    with a total of 166 snps

  10 contigs containing 53 sequences

    10(100.00)% of these contigs contain snps

    with a total of 166 snps

  9 contigs containing 54 sequences

    8(88.89)% of these contigs contain snps

    with a total of 170 snps

  14 contigs containing 55 sequences

    12(85.71)% of these contigs contain snps

    with a total of 243 snps

  8 contigs containing 56 sequences

    8(100.00)% of these contigs contain snps

    with a total of 216 snps

  10 contigs containing 57 sequences

    9(90.00)% of these contigs contain snps

    with a total of 160 snps

  11 contigs containing 58 sequences

    11(100.00)% of these contigs contain snps

    with a total of 230 snps

  7 contigs containing 59 sequences

    7(100.00)% of these contigs contain snps

    with a total of 85 snps

  15 contigs containing 60 sequences

    14(93.33)% of these contigs contain snps

    with a total of 208 snps

  11 contigs containing 61 sequences

    11(100.00)% of these contigs contain snps

    with a total of 233 snps

  4 contigs containing 62 sequences

    4(100.00)% of these contigs contain snps

    with a total of 49 snps

  9 contigs containing 63 sequences

    9(100.00)% of these contigs contain snps

    with a total of 175 snps

  10 contigs containing 64 sequences

    10(100.00)% of these contigs contain snps

    with a total of 167 snps

  3 contigs containing 65 sequences

    3(100.00)% of these contigs contain snps

    with a total of 79 snps

  8 contigs containing 66 sequences

    8(100.00)% of these contigs contain snps

    with a total of 124 snps

  7 contigs containing 67 sequences

    6(85.71)% of these contigs contain snps

    with a total of 92 snps

  3 contigs containing 68 sequences

    3(100.00)% of these contigs contain snps

    with a total of 32 snps

  12 contigs containing 69 sequences

    12(100.00)% of these contigs contain snps

    with a total of 227 snps

  5 contigs containing 70 sequences

    5(100.00)% of these contigs contain snps

    with a total of 89 snps

  7 contigs containing 71 sequences

    7(100.00)% of these contigs contain snps

    with a total of 154 snps

  10 contigs containing 72 sequences

    10(100.00)% of these contigs contain snps

    with a total of 171 snps

  7 contigs containing 73 sequences

    6(85.71)% of these contigs contain snps

    with a total of 103 snps

  8 contigs containing 74 sequences

    7(87.50)% of these contigs contain snps

    with a total of 142 snps

  4 contigs containing 75 sequences

    4(100.00)% of these contigs contain snps

    with a total of 113 snps

  5 contigs containing 76 sequences

    5(100.00)% of these contigs contain snps

    with a total of 103 snps

  3 contigs containing 77 sequences

    3(100.00)% of these contigs contain snps

    with a total of 60 snps

  9 contigs containing 78 sequences

    6(66.67)% of these contigs contain snps

    with a total of 133 snps

  3 contigs containing 79 sequences

    3(100.00)% of these contigs contain snps

    with a total of 44 snps

  6 contigs containing 80 sequences

    6(100.00)% of these contigs contain snps

    with a total of 120 snps

  8 contigs containing 81 sequences

    8(100.00)% of these contigs contain snps

    with a total of 220 snps

  3 contigs containing 82 sequences

    3(100.00)% of these contigs contain snps

    with a total of 71 snps

  3 contigs containing 83 sequences

    3(100.00)% of these contigs contain snps

    with a total of 100 snps

  2 contigs containing 84 sequences

    2(100.00)% of these contigs contain snps

    with a total of 25 snps

  4 contigs containing 85 sequences

    4(100.00)% of these contigs contain snps

    with a total of 80 snps

  1 contigs containing 86 sequences

    1(100.00)% of these contigs contain snps

    with a total of 45 snps

  3 contigs containing 87 sequences

    3(100.00)% of these contigs contain snps

    with a total of 93 snps

  2 contigs containing 88 sequences

    2(100.00)% of these contigs contain snps

    with a total of 18 snps

  2 contigs containing 89 sequences

    2(100.00)% of these contigs contain snps

    with a total of 76 snps

  5 contigs containing 90 sequences

    5(100.00)% of these contigs contain snps

    with a total of 90 snps

  2 contigs containing 91 sequences

    2(100.00)% of these contigs contain snps

    with a total of 46 snps

  3 contigs containing 92 sequences

    3(100.00)% of these contigs contain snps

    with a total of 100 snps

  7 contigs containing 93 sequences

    7(100.00)% of these contigs contain snps

    with a total of 144 snps

  1 contigs containing 94 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 97 sequences

    1(100.00)% of these contigs contain snps

    with a total of 33 snps

  1 contigs containing 98 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  2 contigs containing 99 sequences

    2(100.00)% of these contigs contain snps

    with a total of 43 snps

  2 contigs containing 100 sequences

    2(100.00)% of these contigs contain snps

    with a total of 30 snps

  2 contigs containing 101 sequences

    2(100.00)% of these contigs contain snps

    with a total of 42 snps

  2 contigs containing 102 sequences

    2(100.00)% of these contigs contain snps

    with a total of 50 snps

  3 contigs containing 103 sequences

    3(100.00)% of these contigs contain snps

    with a total of 40 snps

  3 contigs containing 104 sequences

    3(100.00)% of these contigs contain snps

    with a total of 85 snps

  7 contigs containing 105 sequences

    6(85.71)% of these contigs contain snps

    with a total of 132 snps

  4 contigs containing 106 sequences

    4(100.00)% of these contigs contain snps

    with a total of 74 snps

  4 contigs containing 107 sequences

    4(100.00)% of these contigs contain snps

    with a total of 127 snps

  4 contigs containing 108 sequences

    3(75.00)% of these contigs contain snps

    with a total of 95 snps

  1 contigs containing 109 sequences

    1(100.00)% of these contigs contain snps

    with a total of 22 snps

  1 contigs containing 110 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 111 sequences

    1(100.00)% of these contigs contain snps

    with a total of 31 snps

  1 contigs containing 112 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 113 sequences

    1(100.00)% of these contigs contain snps

    with a total of 25 snps

  1 contigs containing 114 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  2 contigs containing 115 sequences

    2(100.00)% of these contigs contain snps

    with a total of 30 snps

  1 contigs containing 116 sequences

    1(100.00)% of these contigs contain snps

    with a total of 34 snps

  1 contigs containing 117 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  2 contigs containing 119 sequences

    2(100.00)% of these contigs contain snps

    with a total of 37 snps

  1 contigs containing 120 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  3 contigs containing 121 sequences

    2(66.67)% of these contigs contain snps

    with a total of 43 snps

  1 contigs containing 122 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  1 contigs containing 123 sequences

    1(100.00)% of these contigs contain snps

    with a total of 26 snps

  1 contigs containing 127 sequences

    1(100.00)% of these contigs contain snps

    with a total of 31 snps

  2 contigs containing 129 sequences

    2(100.00)% of these contigs contain snps

    with a total of 89 snps

  1 contigs containing 130 sequences

    1(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 132 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  3 contigs containing 133 sequences

    3(100.00)% of these contigs contain snps

    with a total of 75 snps

  1 contigs containing 134 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  3 contigs containing 136 sequences

    3(100.00)% of these contigs contain snps

    with a total of 115 snps

  2 contigs containing 138 sequences

    2(100.00)% of these contigs contain snps

    with a total of 50 snps

  1 contigs containing 139 sequences

    1(100.00)% of these contigs contain snps

    with a total of 18 snps

  1 contigs containing 140 sequences

    1(100.00)% of these contigs contain snps

    with a total of 30 snps

  1 contigs containing 141 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  3 contigs containing 143 sequences

    3(100.00)% of these contigs contain snps

    with a total of 82 snps

  1 contigs containing 144 sequences

    1(100.00)% of these contigs contain snps

    with a total of 5 snps

  2 contigs containing 145 sequences

    2(100.00)% of these contigs contain snps

    with a total of 107 snps

  1 contigs containing 146 sequences

    1(100.00)% of these contigs contain snps

    with a total of 41 snps

  1 contigs containing 149 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps

  1 contigs containing 150 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  2 contigs containing 151 sequences

    2(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 152 sequences

    1(100.00)% of these contigs contain snps

    with a total of 95 snps

  5 contigs containing 153 sequences

    5(100.00)% of these contigs contain snps

    with a total of 130 snps

  1 contigs containing 154 sequences

    1(100.00)% of these contigs contain snps

    with a total of 47 snps

  1 contigs containing 155 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps

  2 contigs containing 156 sequences

    2(100.00)% of these contigs contain snps

    with a total of 61 snps

  3 contigs containing 162 sequences

    3(100.00)% of these contigs contain snps

    with a total of 145 snps

  3 contigs containing 164 sequences

    3(100.00)% of these contigs contain snps

    with a total of 87 snps

  1 contigs containing 165 sequences

    1(100.00)% of these contigs contain snps

    with a total of 10 snps

  1 contigs containing 172 sequences

    1(100.00)% of these contigs contain snps

    with a total of 55 snps

  1 contigs containing 173 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 174 sequences

    1(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 176 sequences

    1(100.00)% of these contigs contain snps

    with a total of 26 snps

  1 contigs containing 177 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  1 contigs containing 181 sequences

    1(100.00)% of these contigs contain snps

    with a total of 24 snps

  1 contigs containing 182 sequences

    1(100.00)% of these contigs contain snps

    with a total of 9 snps

  1 contigs containing 184 sequences

    1(100.00)% of these contigs contain snps

    with a total of 44 snps

  1 contigs containing 187 sequences

    1(100.00)% of these contigs contain snps

    with a total of 15 snps

  1 contigs containing 196 sequences

    1(100.00)% of these contigs contain snps

    with a total of 14 snps

  1 contigs containing 198 sequences

    1(100.00)% of these contigs contain snps

    with a total of 26 snps

  1 contigs containing 203 sequences

    1(100.00)% of these contigs contain snps

    with a total of 39 snps

  1 contigs containing 204 sequences

    1(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 205 sequences

    1(100.00)% of these contigs contain snps

    with a total of 78 snps

  2 contigs containing 206 sequences

    2(100.00)% of these contigs contain snps

    with a total of 75 snps

  2 contigs containing 207 sequences

    2(100.00)% of these contigs contain snps

    with a total of 45 snps

  1 contigs containing 210 sequences

    1(100.00)% of these contigs contain snps

    with a total of 34 snps

  1 contigs containing 214 sequences

    1(100.00)% of these contigs contain snps

    with a total of 44 snps

  1 contigs containing 216 sequences

    1(100.00)% of these contigs contain snps

    with a total of 59 snps

  2 contigs containing 218 sequences

    2(100.00)% of these contigs contain snps

    with a total of 45 snps

  2 contigs containing 221 sequences

    2(100.00)% of these contigs contain snps

    with a total of 100 snps

  1 contigs containing 222 sequences

    1(100.00)% of these contigs contain snps

    with a total of 82 snps

  2 contigs containing 231 sequences

    2(100.00)% of these contigs contain snps

    with a total of 51 snps

  1 contigs containing 243 sequences

    1(100.00)% of these contigs contain snps

    with a total of 52 snps

  1 contigs containing 245 sequences

    1(100.00)% of these contigs contain snps

    with a total of 38 snps

  1 contigs containing 246 sequences

    1(100.00)% of these contigs contain snps

    with a total of 70 snps

  1 contigs containing 251 sequences

    1(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 259 sequences

    1(100.00)% of these contigs contain snps

    with a total of 21 snps

  1 contigs containing 261 sequences

    1(100.00)% of these contigs contain snps

    with a total of 62 snps

  1 contigs containing 262 sequences

    1(100.00)% of these contigs contain snps

    with a total of 66 snps

  1 contigs containing 302 sequences

    1(100.00)% of these contigs contain snps

    with a total of 42 snps

  1 contigs containing 303 sequences

    1(100.00)% of these contigs contain snps

    with a total of 13 snps

  1 contigs containing 319 sequences

    1(100.00)% of these contigs contain snps

    with a total of 81 snps

  1 contigs containing 340 sequences

    1(100.00)% of these contigs contain snps

    with a total of 68 snps

  1 contigs containing 359 sequences

    1(100.00)% of these contigs contain snps

    with a total of 74 snps

  1 contigs containing 389 sequences

    1(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 394 sequences

    1(100.00)% of these contigs contain snps

    with a total of 111 snps

  1 contigs containing 402 sequences

    1(100.00)% of these contigs contain snps

    with a total of 74 snps

  1 contigs containing 417 sequences

    1(100.00)% of these contigs contain snps

    with a total of 140 snps

  1 contigs containing 429 sequences

    1(100.00)% of these contigs contain snps

    with a total of 93 snps

  1 contigs containing 461 sequences

    1(100.00)% of these contigs contain snps

    with a total of 45 snps

  1 contigs containing 468 sequences

    1(100.00)% of these contigs contain snps

    with a total of 99 snps

  1 contigs containing 501 sequences

    1(100.00)% of these contigs contain snps

    with a total of 81 snps

  1 contigs containing 516 sequences

    1(100.00)% of these contigs contain snps

    with a total of 76 snps

  1 contigs containing 613 sequences

    1(100.00)% of these contigs contain snps

    with a total of 118 snps

  1 contigs containing 661 sequences

    1(100.00)% of these contigs contain snps

    with a total of 42 snps

  1 contigs containing 666 sequences

    1(100.00)% of these contigs contain snps

    with a total of 75 snps

  1 contigs containing 671 sequences

    1(100.00)% of these contigs contain snps

    with a total of 107 snps

  1 contigs containing 750 sequences

    1(100.00)% of these contigs contain snps

    with a total of 128 snps


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(C) Plant Biotechnology Centre Australia, DPI
Comments/suggestions to Dave Edwards
Dave.Edwards.vic.gov.au
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