PBC Bioinformatics
               
               
               

RESULTS SUMMARY
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  Total sequences analysed = 52113

  Sequences sorted into 9134 contigs and 0 singletons

  Total SNPs detected = 5993

  Total consensus size = 11043558 bp

  SNP frequency = 0.05/100 bp

  Smallest contig = 2 sequences

  Total transitions = 3013

  Total transversions = 2864

  Total indels = 116

  3593 contigs containing 2 sequences

    (0.00)% of these contigs contain snps

  1449 contigs containing 3 sequences

    (0.00)% of these contigs contain snps

  1056 contigs containing 4 sequences

    218(20.64)% of these contigs contain snps

    with a total of 1761 snps

  663 contigs containing 5 sequences

    (0.00)% of these contigs contain snps

  492 contigs containing 6 sequences

    34(6.91)% of these contigs contain snps

    with a total of 218 snps

  366 contigs containing 7 sequences

    37(10.11)% of these contigs contain snps

    with a total of 187 snps

  284 contigs containing 8 sequences

    49(17.25)% of these contigs contain snps

    with a total of 379 snps

  195 contigs containing 9 sequences

    10(5.13)% of these contigs contain snps

    with a total of 44 snps

  138 contigs containing 10 sequences

    9(6.52)% of these contigs contain snps

    with a total of 41 snps

  108 contigs containing 11 sequences

    14(12.96)% of these contigs contain snps

    with a total of 103 snps

  97 contigs containing 12 sequences

    14(14.43)% of these contigs contain snps

    with a total of 109 snps

  71 contigs containing 13 sequences

    2(2.82)% of these contigs contain snps

    with a total of 30 snps

  57 contigs containing 14 sequences

    6(10.53)% of these contigs contain snps

    with a total of 12 snps

  42 contigs containing 15 sequences

    4(9.52)% of these contigs contain snps

    with a total of 5 snps

  42 contigs containing 16 sequences

    6(14.29)% of these contigs contain snps

    with a total of 32 snps

  42 contigs containing 17 sequences

    11(26.19)% of these contigs contain snps

    with a total of 28 snps

  35 contigs containing 18 sequences

    6(17.14)% of these contigs contain snps

    with a total of 26 snps

  26 contigs containing 19 sequences

    10(38.46)% of these contigs contain snps

    with a total of 27 snps

  37 contigs containing 20 sequences

    13(35.14)% of these contigs contain snps

    with a total of 59 snps

  22 contigs containing 21 sequences

    3(13.64)% of these contigs contain snps

    with a total of 5 snps

  26 contigs containing 22 sequences

    6(23.08)% of these contigs contain snps

    with a total of 31 snps

  22 contigs containing 23 sequences

    5(22.73)% of these contigs contain snps

    with a total of 11 snps

  23 contigs containing 24 sequences

    8(34.78)% of these contigs contain snps

    with a total of 24 snps

  15 contigs containing 25 sequences

    4(26.67)% of these contigs contain snps

    with a total of 10 snps

  19 contigs containing 26 sequences

    11(57.89)% of these contigs contain snps

    with a total of 30 snps

  9 contigs containing 27 sequences

    6(66.67)% of these contigs contain snps

    with a total of 37 snps

  9 contigs containing 28 sequences

    6(66.67)% of these contigs contain snps

    with a total of 32 snps

  17 contigs containing 29 sequences

    9(52.94)% of these contigs contain snps

    with a total of 98 snps

  12 contigs containing 30 sequences

    7(58.33)% of these contigs contain snps

    with a total of 68 snps

  10 contigs containing 31 sequences

    6(60.00)% of these contigs contain snps

    with a total of 25 snps

  10 contigs containing 32 sequences

    4(40.00)% of these contigs contain snps

    with a total of 20 snps

  2 contigs containing 33 sequences

    2(100.00)% of these contigs contain snps

    with a total of 2 snps

  9 contigs containing 34 sequences

    9(100.00)% of these contigs contain snps

    with a total of 55 snps

  6 contigs containing 35 sequences

    5(83.33)% of these contigs contain snps

    with a total of 38 snps

  3 contigs containing 36 sequences

    2(66.67)% of these contigs contain snps

    with a total of 13 snps

  8 contigs containing 37 sequences

    7(87.50)% of these contigs contain snps

    with a total of 56 snps

  6 contigs containing 38 sequences

    6(100.00)% of these contigs contain snps

    with a total of 60 snps

  3 contigs containing 39 sequences

    3(100.00)% of these contigs contain snps

    with a total of 18 snps

  4 contigs containing 40 sequences

    4(100.00)% of these contigs contain snps

    with a total of 28 snps

  13 contigs containing 41 sequences

    11(84.62)% of these contigs contain snps

    with a total of 127 snps

  2 contigs containing 42 sequences

    2(100.00)% of these contigs contain snps

    with a total of 18 snps

  3 contigs containing 43 sequences

    3(100.00)% of these contigs contain snps

    with a total of 42 snps

  5 contigs containing 44 sequences

    5(100.00)% of these contigs contain snps

    with a total of 51 snps

  3 contigs containing 45 sequences

    3(100.00)% of these contigs contain snps

    with a total of 51 snps

  3 contigs containing 46 sequences

    3(100.00)% of these contigs contain snps

    with a total of 30 snps

  2 contigs containing 47 sequences

    2(100.00)% of these contigs contain snps

    with a total of 15 snps

  3 contigs containing 48 sequences

    3(100.00)% of these contigs contain snps

    with a total of 22 snps

  3 contigs containing 49 sequences

    3(100.00)% of these contigs contain snps

    with a total of 25 snps

  4 contigs containing 50 sequences

    4(100.00)% of these contigs contain snps

    with a total of 80 snps

  1 contigs containing 51 sequences

    1(100.00)% of these contigs contain snps

    with a total of 8 snps

  4 contigs containing 52 sequences

    4(100.00)% of these contigs contain snps

    with a total of 69 snps

  2 contigs containing 53 sequences

    2(100.00)% of these contigs contain snps

    with a total of 36 snps

  1 contigs containing 54 sequences

    1(100.00)% of these contigs contain snps

    with a total of 11 snps

  3 contigs containing 57 sequences

    3(100.00)% of these contigs contain snps

    with a total of 53 snps

  2 contigs containing 59 sequences

    2(100.00)% of these contigs contain snps

    with a total of 63 snps

  3 contigs containing 60 sequences

    3(100.00)% of these contigs contain snps

    with a total of 43 snps

  2 contigs containing 61 sequences

    2(100.00)% of these contigs contain snps

    with a total of 27 snps

  5 contigs containing 62 sequences

    5(100.00)% of these contigs contain snps

    with a total of 112 snps

  1 contigs containing 63 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 64 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps

  2 contigs containing 65 sequences

    2(100.00)% of these contigs contain snps

    with a total of 41 snps

  1 contigs containing 66 sequences

    1(100.00)% of these contigs contain snps

    with a total of 36 snps

  1 contigs containing 68 sequences

    1(100.00)% of these contigs contain snps

    with a total of 22 snps

  2 contigs containing 69 sequences

    2(100.00)% of these contigs contain snps

    with a total of 42 snps

  1 contigs containing 73 sequences

    1(100.00)% of these contigs contain snps

    with a total of 19 snps

  1 contigs containing 74 sequences

    1(100.00)% of these contigs contain snps

    with a total of 34 snps

  1 contigs containing 76 sequences

    1(100.00)% of these contigs contain snps

    with a total of 22 snps

  2 contigs containing 78 sequences

    2(100.00)% of these contigs contain snps

    with a total of 51 snps

  1 contigs containing 79 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  1 contigs containing 80 sequences

    1(100.00)% of these contigs contain snps

    with a total of 47 snps

  1 contigs containing 82 sequences

    1(100.00)% of these contigs contain snps

    with a total of 31 snps

  1 contigs containing 84 sequences

    1(100.00)% of these contigs contain snps

    with a total of 57 snps

  1 contigs containing 85 sequences

    1(100.00)% of these contigs contain snps

    with a total of 37 snps

  1 contigs containing 87 sequences

    1(100.00)% of these contigs contain snps

    with a total of 25 snps

  1 contigs containing 96 sequences

    1(100.00)% of these contigs contain snps

    with a total of 33 snps

  4 contigs containing 104 sequences

    4(100.00)% of these contigs contain snps

    with a total of 76 snps

  1 contigs containing 107 sequences

    1(100.00)% of these contigs contain snps

    with a total of 28 snps

  1 contigs containing 109 sequences

    1(100.00)% of these contigs contain snps

    with a total of 17 snps

  2 contigs containing 110 sequences

    2(100.00)% of these contigs contain snps

    with a total of 62 snps

  1 contigs containing 113 sequences

    1(100.00)% of these contigs contain snps

    with a total of 35 snps

  1 contigs containing 118 sequences

    1(100.00)% of these contigs contain snps

    with a total of 27 snps

  1 contigs containing 129 sequences

    1(100.00)% of these contigs contain snps

    with a total of 20 snps

  3 contigs containing 142 sequences

    3(100.00)% of these contigs contain snps

    with a total of 167 snps

  3 contigs containing 151 sequences

    3(100.00)% of these contigs contain snps

    with a total of 123 snps

  1 contigs containing 163 sequences

    1(100.00)% of these contigs contain snps

    with a total of 41 snps

  1 contigs containing 174 sequences

    1(100.00)% of these contigs contain snps

    with a total of 29 snps

  1 contigs containing 188 sequences

    1(100.00)% of these contigs contain snps

    with a total of 61 snps

  1 contigs containing 228 sequences

    1(100.00)% of these contigs contain snps

    with a total of 58 snps

  1 contigs containing 248 sequences

    1(100.00)% of these contigs contain snps

    with a total of 77 snps


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(C) Plant Biotechnology Centre Australia, DPI
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Dave.Edwards.vic.gov.au
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